Skill.md files: teach Claude once, not every chat.

• SKILL.md

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name: review-grant
description: Run a 6-agent pre-submission panel review for a grant proposal targeting a specified funder or program
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• SKILL.md

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name: review-pap
description: Run a 6-agent pre-submission review of a pre-analysis plan (PAP) for a specified registration target or journal
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• SKILL.md

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name: review-paper-code
description: Review research code for reproducibility and quality, extract the paper's main empirical claims, compare paper to code, and write a constructive markdown report. Designed for social science / economics projects with LaTeX papers and Stata, R, or Python code.
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• SKILL.md

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name: review-paper-light
description: Run a fast 2-agent pre-submission check for an economics paper — focuses on contribution, identification, and causal overclaiming. Completes in ~1 minute.
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• SKILL.md

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name: review-paper
description: Run a 6-agent pre-submission referee report for an academic paper targeting a specified journal
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• SKILL.md

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name: apsa-style
description: APSA style checker for Quarto (.qmd) files. Checks numbers, capitalization, abbreviations, italics, in-text citations, titles of works, neutral and unbiased language, and APSA-specific terminology against the APSA Style Manual for Political Science (2018, updated 2023). Produces a structured markdown report organized by document section — never modifies the source file. Use when asked to check APSA style, fix citations, review capitalization, check number formatting, or flag biased language in a .qmd document. For grammar, spelling, and punctuation, use the proofread skill instead. Supports an optional output-file argument and an optional @sec-label argument to restrict checking to one section.
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• SKILL.md

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name: assess-outline
description: Assesses a research paper outline (.qmd file) against structured criteria from Kosuke Imai's empirical research guide. Evaluates the abstract and section outline for: research question clarity, stated contributions, hypotheses and testable implications, data description, planned results and inferential approach, and robustness checks. Detects causal papers from the abstract and conditionally assesses identification strategy only when causal framing is present. Produces a structured markdown report with PASS/PARTIAL/FAIL assessments and actionable suggestions. Use when asked to assess, evaluate, review, or check a paper outline, abstract-and-outline, or research plan in a .qmd file.
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• SKILL.md

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name: latex-to-quarto
description: Converts LaTeX article-class .tex documents to Quarto .qmd format for multi-format publishing (HTML, PDF, Word). Use when asked to convert, port, migrate, or translate a .tex LaTeX file to Quarto; when porting an academic paper or manuscript from LaTeX to Quarto; when a .tex document needs to render to HTML, Word, or Typst PDF. Covers preamble → YAML front matter, section headings, text formatting, math, citations (natbib/biblatex), cross-references, figures, tables, lists, footnotes, hyperlinks, and special characters.
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• SKILL.md

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name: latex-to-typst
description: Translates LaTeX documents (.tex) to Typst (.typ), focusing on article-class documents. Use when asked to convert, port, migrate, or translate LaTeX to Typst. Covers document structure, text formatting, page layout, math equations and symbols, figures, tables, TikZ-to-CeTZ diagrams, bibliography, cross-references, footnotes, and code blocks. Includes comprehensive symbol mapping tables.
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• SKILL.md

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name: markdown-unwrap
description: Unwraps hard-wrapped markdown files so that each sentence ends with a newline instead of mid-sentence line breaks. Joins continuation lines within a paragraph into single lines, then re-breaks at sentence boundaries (period, question mark, exclamation point). Preserves blank lines, headings, fenced code blocks, block quotes, and list items. Use when asked to unwrap text, fix line breaks, reflow sentences, or clean up hard-wrapped markdown or .qmd files.
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• SKILL.md

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name: paper-summary
description: Writes expert academic paper summaries for social science research, particularly political science and applied statistics. Use when asked to summarize, review, or create a reading summary of an academic paper, PDF, or research article. Accepts a file (PDF or text format) or a directory of papers. Produces a structured markdown summary — approximately 400–600 words — covering primary contributions, major questions and answers with point estimates, methods and data, and limitations and robustness. Includes BibTeX citation retrieved from Google Scholar and keyword metadata.
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• SKILL.md

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name: proofread
description: Expert copy editor for Quarto (.qmd) files. Checks grammar, spelling, punctuation, and academic writing quality. Produces a structured markdown report organized by document section — never modifies the source file. Use when asked to proofread, check grammar, fix typos, or review prose in a .qmd document. For APSA style rules (numbers, citations, capitalization, abbreviations, neutral language), use the apsa-style skill instead. Supports an optional output-file argument and an optional @sec-label argument to restrict checking to one section.
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• SKILL.md

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name: pseudo-merge
description: Takes a proofread or apsa-style report file (or any markdown file using **Original:** / **Recommended:** syntax) and rewrites the original source file with git merge conflict markers so the user can accept or reject each suggested edit using VS Code or Positron's built-in merge conflict UI. Branch names are "original" and "claude-edits". Use when asked to apply edits, insert conflict markers, or set up merge resolution for a copy-edit report. Supports an optional @sec-label argument to restrict markers to one section.
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• SKILL.md

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name: quarto-clean
description: Cleans a Quarto (.qmd) file by replacing LaTeX holdovers with proper Quarto/Pandoc syntax so the document renders correctly to HTML, PDF (Typst/LaTeX), and Word. Fixes citations (\citep → [@key]), cross-references (\ref → @label), figures (\includegraphics → markdown), tables, text formatting (\textbf → **bold**), inline math (\( \) → $ $), hyperlinks (\href → [text](url)), footnotes (\footnote → ^[]), list environments, section headings, and R Markdown chunk options (dot-style → #| YAML). Use when asked to clean, fix, modernize, or port a Quarto or R Markdown document; when LaTeX commands appear in a .qmd file; when a document fails to render to Word or Typst; or when citations/cross-references do not appear in non-LaTeX output.
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• SKILL.md

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name: redistricting-analysis
description: Redistricting analysis in R using the redistverse ecosystem. Use whenever the user is working with redist, redistmetrics, ggredist, geomander, adj, alarmdata, PL94171, censable, easycensus, tinytiger, baf, rict, or redistio. Covers the complete pipeline: Census and spatial data loading, adjacency graph construction, SMC/MCMC simulation, constraints (population balance, county splits, VRA compliance), convergence diagnostics, plan metrics (compactness, partisan fairness, splits), visualization, summary tables, and interactive plan drawing. Invoke whenever the user mentions redistricting, gerrymandering, district plans, simulation ensembles, or any redistverse package by name.
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• SKILL.md

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name: write-well
description: Prose quality checker for Quarto (.qmd) files, grounded in William Zinsser's *On Writing Well* (30th Anniversary Edition). Checks for clutter, weak verbs, hollow qualifiers, clichés, inflated academic voice, poor leads and endings, pronoun and tense inconsistency, and unclear explanation. Produces a structured markdown report organized by document section — never modifies the source file. Use when asked to improve prose quality, tighten writing, reduce clutter, or apply Zinsser's writing principles to a draft. For grammar and punctuation, use the proofread skill. For APSA style rules, use the apsa-style skill. Supports an optional output-file argument and an optional @sec-label argument to restrict checking to one section.
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• SKILL.md

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name: bayesian-workflow
description: Opinionated Bayesian modeling workflow with PyMC and ArviZ. Contains critical guardrails (nutpie sampler, prior/posterior predictive checks, LOO-PIT calibration, prior sensitivity checks, 94% HDI, non-centered parameterizations, reproducible seeds) that agents won't apply unprompted — always consult before writing Bayesian model code. Trigger on: building probabilistic/Bayesian models, prior elicitation, MCMC inference, convergence diagnostics (divergences, R-hat, ESS), model comparison (LOO-CV, ELPD, stacking weights), hierarchical/multilevel models, count regressions, logistic regression with uncertainty, prior sensitivity analysis, reporting Bayesian results, or mentions of PyMC, ArviZ, InferenceData, credible intervals, posterior distributions, shrinkage, uncertainty quantification. Also trigger for model comparison, diagnosing sampling problems, choosing priors, or presenting stats to non-technical audiences.
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• SKILL.md

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name: causal-inference
description: Production-grade Bayesian causal inference with PyMC, CausalPy, and DoWhy. Enforces DAG-first thinking, mandatory user checkpoints for assumptions, design-specific refutation, and defensible reporting with causal language guardrails. Trigger on: causal inference, causal effect estimation, treatment effects, counterfactuals, difference-in-differences (DiD), synthetic control, regression discontinuity (RDD), interrupted time series (ITS), instrumental variables (IV), propensity scores, DAGs, causal graphs, confounders, backdoor criterion, do-calculus, interventional distributions, pm.do(), pm.observe(), CausalPy, DoWhy, mediation analysis, refutation, sensitivity analysis, parallel trends, placebo tests, or any question of the form "does X cause Y" or "what is the effect of X on Y."
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• SKILL.md

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name: academic-paper-reviewer
description: Multi-perspective academic paper review with dynamic reviewer personas. Simulates 5 independent reviewers (EIC + 3 peer reviewers + Devil's Advocate) with field-specific expertise. Supports full review, re-review (verification), quick assessment, methodology focus, and Socratic guided modes. Triggers on: review paper, peer review, manuscript review, referee report, review my paper, critique paper, simulate review, editorial review.
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• SKILL.md

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name: academic-paper
description: Academic paper writing skill with 12-agent pipeline. v2.5: Style Calibration (learn author's writing voice from past papers) + Writing Quality Check (writing quality checklist for natural prose). Supports IMRaD, literature review, theoretical, case study, policy brief, and conference paper structures. APA 7.0 (default), Chicago, MLA, IEEE, Vancouver citation formats. Bilingual abstracts (zh-TW + EN). Multi-format output (LaTeX, DOCX, PDF, Markdown). Triggers on: write paper, academic paper, paper outline, write abstract, revise paper, check citations, convert to LaTeX, guide my paper, parse reviews, revision roadmap, 寫論文, 學術論文, 論文大綱, 寫摘要, 修改論文, 檢查引用, 引導我寫論文, 帶我規劃論文, 逐章規劃, 論文架構, 審查意見, 修訂路線圖.
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• SKILL.md

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name: academic-pipeline
description: Orchestrator for the full academic research pipeline: research -> write -> integrity check -> review -> revise -> re-review -> re-revise -> final integrity check -> finalize. Coordinates deep-research, academic-paper, and academic-paper-reviewer into a seamless 9-stage workflow with mandatory integrity verification, two-stage peer review, and reproducible quality gates. Triggers on: academic pipeline, research to paper, full paper workflow, paper pipeline, end-to-end paper, research-to-publication, complete paper workflow.
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• SKILL.md

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name: deep-research
description: Universal deep research agent team. 13-agent pipeline for rigorous academic research on any topic. 7 modes: full research, quick brief, paper review, lit-review, fact-check, Socratic guided research dialogue, and systematic review with optional meta-analysis. Covers research question formulation, Socratic mentoring, methodology design, systematic literature search, source verification, cross-source synthesis, risk of bias assessment, meta-analysis, APA 7.0 report compilation, editorial review, devil's advocate challenges, ethics review, and post-research literature monitoring. Triggers on: research, deep research, literature review, systematic review, meta-analysis, PRISMA, evidence synthesis, fact-check, guide my research, help me think through, 研究, 深度研究, 文獻回顧, 文獻探討, 系統性回顧, 後設分析, 事實查核, 引導我的研究, 幫我釐清, 幫我想想, 我不確定要研究什麼, 研究方向, 研究主題.
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• SKILL.md

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name: a1
description: VS-Enhanced Research Question Refiner - Prevents Mode Collapse and derives differentiated research questions
Enhanced VS 3-Phase process: Modal question avoidance, alternatives presentation, differentiated RQ recommendation
Use when: refining research ideas, formulating research questions, clarifying scope
Triggers: research question, 연구 질문, PICO, SPIDER, research idea
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• SKILL.md

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name: a2
description: VS-Enhanced Theoretical Framework Architect with Critique & Visualization
Full VS 5-Phase process: Modal theory avoidance, Long-tail exploration, differentiated framework presentation
Absorbed A3 (Devil's Advocate) critique and A6 (Conceptual Framework Visualizer) capabilities
Use when: building theoretical foundations, designing conceptual models, deriving hypotheses, critiquing frameworks, visualizing models
Triggers: theoretical framework, 이론적 프레임워크, conceptual model, 개념적 모형, hypothesis derivation, critique, devil's advocate, 반론, visualization, diagram
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